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BioReasonCell-ExperimentData / README.md
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--- dataset_info: - config_name: benchmark_chem_tahoe_v1 features: - name: sample_id dtype: string - name: dataset dtype: string - name: drug dtype: string - name: concentration dtype: float64 - name: cell_type dtype: string - name: pathway_name dtype: string - name: pathway_change dtype: string - name: tissue_type dtype: string - name: experiment dtype: string - name: drug_targets dtype: string - name: moa_broad dtype: string - name: moa_fine dtype: string - name: cell_file dtype: string - name: pert dtype: string - name: pert_rank dtype: int64 - name: row_rank dtype: int64 - name: n_dir_in_universe dtype: int64 - name: rhaister_zero dtype: bool - name: rhaister_few dtype: bool splits: - name: train num_bytes: 9018886 num_examples: 23381 - name: validation num_bytes: 9018886 num_examples: 23381 - name: test num_bytes: 9018886 num_examples: 23381 download_size: 2521710 dataset_size: 27056658 - config_name: benchmark_chem_tahoe_v2 features: - name: sample_id dtype: string - name: drug dtype: string - name: concentration dtype: float64 - name: cell_type dtype: string - name: pathway_name dtype: string - name: pathway_change dtype: string - name: tissue_type dtype: string - name: experiment dtype: string - name: drug_targets dtype: string - name: moa_broad dtype: string - name: moa_fine dtype: string - name: cell_file dtype: string - name: pert dtype: string - name: pert_rank dtype: int64 - name: row_rank dtype: int64 - name: n_dir_in_universe dtype: int64 splits: - name: train num_bytes: 11217085 num_examples: 29213 - name: validation num_bytes: 11217085 num_examples: 29213 - name: test num_bytes: 11217085 num_examples: 29213 download_size: 4536342 dataset_size: 33651255 - config_name: benchmark_genetic_v1_kaufman features: - name: sample_id dtype: string - name: dataset dtype: string - name: gene_target dtype: string - name: cell_type dtype: string - name: pathway_name dtype: string - name: pathway_change dtype: string - name: tissue_type dtype: string - name: experiment dtype: string - name: cell_file dtype: string - name: pert dtype: string - name: pert_rank dtype: int64 - name: row_rank dtype: int64 - name: n_dir_in_universe dtype: int64 - name: rhaister_zero dtype: bool - name: rhaister_few dtype: bool splits: - name: test num_bytes: 606772 num_examples: 1665 download_size: 86189 dataset_size: 606772 - config_name: benchmark_genetic_v1_marson features: - name: sample_id dtype: string - name: dataset dtype: string - name: gene_target dtype: string - name: cell_type dtype: string - name: pathway_name dtype: string - name: pathway_change dtype: string - name: tissue_type dtype: string - name: experiment dtype: string - name: cell_file dtype: string - name: pert dtype: string - name: pert_rank dtype: int64 - name: row_rank dtype: int64 - name: n_dir_in_universe dtype: int64 - name: rhaister_zero dtype: bool - name: rhaister_few dtype: bool splits: - name: test num_bytes: 1542186 num_examples: 4579 download_size: 202344 dataset_size: 1542186 - config_name: benchmark_genetic_v1_nadig features: - name: sample_id dtype: string - name: dataset dtype: string - name: gene_target dtype: string - name: cell_type dtype: string - name: pathway_name dtype: string - name: pathway_change dtype: string - name: tissue_type dtype: string - name: experiment dtype: string - name: cell_file dtype: string - name: pert dtype: string - name: pert_rank dtype: int64 - name: row_rank dtype: int64 - name: n_dir_in_universe dtype: int64 - name: rhaister_zero dtype: bool - name: rhaister_few dtype: bool splits: - name: test num_bytes: 2699736 num_examples: 8708 download_size: 322536 dataset_size: 2699736 - config_name: benchmark_genetic_v1_xaira_orion features: - name: sample_id dtype: string - name: dataset dtype: string - name: gene_target dtype: string - name: cell_type dtype: string - name: pathway_name dtype: string - name: pathway_change dtype: string - name: tissue_type dtype: string - name: experiment dtype: string - name: cell_file dtype: string - name: pert dtype: string - name: pert_rank dtype: int64 - name: row_rank dtype: int64 - name: n_dir_in_universe dtype: int64 - name: rhaister_zero dtype: bool - name: rhaister_few dtype: bool splits: - name: test num_bytes: 3563784 num_examples: 9929 download_size: 386611 dataset_size: 3563784 - config_name: benchmark_genetic_v1_xaira_pisces features: - name: sample_id dtype: string - name: dataset dtype: string - name: gene_target dtype: string - name: cell_type dtype: string - name: pathway_name dtype: string - name: pathway_change dtype: string - name: tissue_type dtype: string - name: experiment dtype: string - name: cell_file dtype: string - name: pert dtype: string - name: pert_rank dtype: int64 - name: row_rank dtype: int64 - name: n_dir_in_universe dtype: int64 - name: rhaister_zero dtype: bool - name: rhaister_few dtype: bool splits: - name: test num_bytes: 828600 num_examples: 2186 download_size: 108947 dataset_size: 828600 - config_name: cleansplit_indist_kaufman features: - name: sample_id dtype: string - name: dataset dtype: string - name: gene_target dtype: string - name: cell_type dtype: string - name: pathway_name dtype: string - name: pathway_change dtype: string - name: question dtype: string - name: reasoning dtype: string - name: answer dtype: string - name: cell_file dtype: string splits: - name: train num_bytes: 28054820 num_examples: 2607 - name: validation num_bytes: 28054820 num_examples: 2607 - name: test num_bytes: 28054820 num_examples: 2607 download_size: 31843863 dataset_size: 84164460 - config_name: cleansplit_indist_marson features: - name: sample_id dtype: string - name: dataset dtype: string - name: gene_target dtype: string - name: cell_type dtype: string - name: pathway_name dtype: string - name: pathway_change dtype: string - name: question dtype: string - name: reasoning dtype: string - name: answer dtype: string - name: cell_file dtype: string splits: - name: train num_bytes: 50999519 num_examples: 8753 - name: validation num_bytes: 50999519 num_examples: 8753 - name: test num_bytes: 50999519 num_examples: 8753 download_size: 57521799 dataset_size: 152998557 - config_name: cleansplit_indist_minimal_kaufman features: - name: sample_id dtype: string - name: dataset dtype: string - name: gene_target dtype: string - name: cell_type dtype: string - name: pathway_name dtype: string - name: pathway_change dtype: string - name: question dtype: string - name: reasoning dtype: string - name: answer dtype: string - name: cell_file dtype: string splits: - name: train num_bytes: 9937392 num_examples: 2607 - name: validation num_bytes: 9937392 num_examples: 2607 - name: test num_bytes: 9937392 num_examples: 2607 download_size: 10819269 dataset_size: 29812176 - config_name: cleansplit_indist_minimal_marson features: - name: sample_id dtype: string - name: dataset dtype: string - name: gene_target dtype: string - name: cell_type dtype: string - name: pathway_name dtype: string - name: pathway_change dtype: string - name: question dtype: string - name: reasoning dtype: string - name: answer dtype: string - name: cell_file dtype: string splits: - name: train num_bytes: 24666183 num_examples: 8753 - name: validation num_bytes: 24666183 num_examples: 8753 - name: test num_bytes: 24666183 num_examples: 8753 download_size: 29412189 dataset_size: 73998549 - config_name: cleansplit_indist_minimal_nadig features: - name: sample_id dtype: string - name: dataset dtype: string - name: gene_target dtype: string - name: cell_type dtype: string - name: pathway_name dtype: string - name: pathway_change dtype: string - name: question dtype: string - name: reasoning dtype: string - name: answer dtype: string - name: cell_file dtype: string splits: - name: train num_bytes: 10188066 num_examples: 3398 - name: validation num_bytes: 10188066 num_examples: 3398 - name: test num_bytes: 10188066 num_examples: 3398 download_size: 12755757 dataset_size: 30564198 - config_name: cleansplit_indist_minimal_papalexi features: - name: sample_id dtype: string - name: dataset dtype: string - name: gene_target dtype: string - name: cell_type dtype: string - name: pathway_name dtype: string - name: pathway_change dtype: string - name: question dtype: string - name: reasoning dtype: string - name: answer dtype: string - name: cell_file dtype: string splits: - name: train num_bytes: 72602 num_examples: 20 - name: validation num_bytes: 72602 num_examples: 20 - name: test num_bytes: 72602 num_examples: 20 download_size: 83166 dataset_size: 217806 - config_name: cleansplit_indist_minimal_xaira_orion features: - name: sample_id dtype: string - name: dataset dtype: string - name: gene_target dtype: string - name: cell_type dtype: string - name: pathway_name dtype: string - name: pathway_change dtype: string - name: question dtype: string - name: reasoning dtype: string - name: answer dtype: string - name: cell_file dtype: string splits: - name: train num_bytes: 11718383 num_examples: 4463 - name: validation num_bytes: 11718383 num_examples: 4463 - name: test num_bytes: 11718383 num_examples: 4463 download_size: 13690782 dataset_size: 35155149 - config_name: cleansplit_indist_minimal_xaira_pisces features: - name: sample_id dtype: string - name: dataset dtype: string - name: gene_target dtype: string - name: cell_type dtype: string - name: pathway_name dtype: string - name: pathway_change dtype: string - name: question dtype: string - name: reasoning dtype: string - name: answer dtype: string - name: cell_file dtype: string splits: - name: train num_bytes: 1349865 num_examples: 504 - name: validation num_bytes: 1349865 num_examples: 504 - name: test num_bytes: 1349865 num_examples: 504 download_size: 1608492 dataset_size: 4049595 - config_name: cleansplit_indist_minimal_xu2026 features: - name: sample_id dtype: string - name: dataset dtype: string - name: gene_target dtype: string - name: cell_type dtype: string - name: pathway_name dtype: string - name: pathway_change dtype: string - name: question dtype: string - name: reasoning dtype: string - name: answer dtype: string - name: cell_file dtype: string splits: - name: train num_bytes: 765478 num_examples: 255 - name: validation num_bytes: 765478 num_examples: 255 - name: test num_bytes: 765478 num_examples: 255 download_size: 789555 dataset_size: 2296434 - config_name: cleansplit_indist_nadig features: - name: sample_id dtype: string - name: dataset dtype: string - name: gene_target dtype: string - name: cell_type dtype: string - name: pathway_name dtype: string - name: pathway_change dtype: string - name: question dtype: string - name: reasoning dtype: string - name: answer dtype: string - name: cell_file dtype: string splits: - name: train num_bytes: 21658527 num_examples: 3398 - name: validation num_bytes: 21658527 num_examples: 3398 - name: test num_bytes: 21658527 num_examples: 3398 download_size: 25982256 dataset_size: 64975581 - config_name: cleansplit_indist_papalexi features: - name: sample_id dtype: string - name: dataset dtype: string - name: gene_target dtype: string - name: cell_type dtype: string - name: pathway_name dtype: string - name: pathway_change dtype: string - name: question dtype: string - name: reasoning dtype: string - name: answer dtype: string - name: cell_file dtype: string splits: - name: train num_bytes: 223232 num_examples: 20 - name: validation num_bytes: 223232 num_examples: 20 - name: test num_bytes: 223232 num_examples: 20 download_size: 181656 dataset_size: 669696 - config_name: cleansplit_indist_xaira_orion features: - name: sample_id dtype: string - name: dataset dtype: string - name: gene_target dtype: string - name: cell_type dtype: string - name: pathway_name dtype: string - name: pathway_change dtype: string - name: question dtype: string - name: reasoning dtype: string - name: answer dtype: string - name: cell_file dtype: string splits: - name: train num_bytes: 24136651 num_examples: 4463 - name: validation num_bytes: 24136651 num_examples: 4463 - name: test num_bytes: 24136651 num_examples: 4463 download_size: 26500515 dataset_size: 72409953 - config_name: cleansplit_indist_xaira_pisces features: - name: sample_id dtype: string - name: dataset dtype: string - name: gene_target dtype: string - name: cell_type dtype: string - name: pathway_name dtype: string - name: pathway_change dtype: string - name: question dtype: string - name: reasoning dtype: string - name: answer dtype: string - name: cell_file dtype: string splits: - name: train num_bytes: 2907052 num_examples: 504 - name: validation num_bytes: 2907052 num_examples: 504 - name: test num_bytes: 2907052 num_examples: 504 download_size: 3239901 dataset_size: 8721156 - config_name: cleansplit_indist_xu2026 features: - name: sample_id dtype: string - name: dataset dtype: string - name: gene_target dtype: string - name: cell_type dtype: string - name: pathway_name dtype: string - name: pathway_change dtype: string - name: question dtype: string - name: reasoning dtype: string - name: answer dtype: string - name: cell_file dtype: string splits: - name: train num_bytes: 1633302 num_examples: 255 - name: validation num_bytes: 1633302 num_examples: 255 - name: test num_bytes: 1633302 num_examples: 255 download_size: 1681623 dataset_size: 4899906 - config_name: grpo_gene_pathway_v1 features: - name: sample_id dtype: string - name: dataset dtype: string - name: gene_target dtype: string - name: cell_type dtype: string - name: cell_file dtype: string - name: tissue_type dtype: string - name: experiment dtype: string - name: pathway_name dtype: string - name: pathway_change dtype: string - name: pathway_score dtype: float64 - name: pert dtype: string - name: eval_set dtype: string splits: - name: train num_bytes: 8653890 num_examples: 20000 - name: test num_bytes: 17012579 num_examples: 48855 download_size: 2759562 dataset_size: 25666469 - config_name: probe_chem_retrieval_v1 features: - name: sample_id dtype: string - name: dataset dtype: string - name: drug dtype: string - name: concentration dtype: float64 - name: cell_type dtype: string - name: pathway_name dtype: string - name: pathway_change dtype: string - name: tissue_type dtype: string - name: experiment dtype: string - name: drug_targets dtype: string - name: moa_broad dtype: string - name: moa_fine dtype: string - name: cell_file dtype: string - name: pert dtype: string - name: pert_rank dtype: int64 - name: row_rank dtype: int64 - name: n_dir_in_universe dtype: int64 - name: rhaister_zero dtype: bool - name: rhaister_few dtype: bool - name: question dtype: string - name: reasoning dtype: string - name: answer dtype: string - name: eval_set dtype: string splits: - name: train num_bytes: 86624741 num_examples: 4686 - name: validation num_bytes: 86624741 num_examples: 4686 - name: test num_bytes: 86624741 num_examples: 4686 download_size: 60279336 dataset_size: 259874223 - config_name: probe_chem_retrieval_v1_shuf features: - name: sample_id dtype: string - name: dataset dtype: string - name: drug dtype: string - name: concentration dtype: float64 - name: cell_type dtype: string - name: pathway_name dtype: string - name: pathway_change dtype: string - name: tissue_type dtype: string - name: experiment dtype: string - name: drug_targets dtype: string - name: moa_broad dtype: string - name: moa_fine dtype: string - name: cell_file dtype: string - name: pert dtype: string - name: pert_rank dtype: int64 - name: row_rank dtype: int64 - name: n_dir_in_universe dtype: int64 - name: rhaister_zero dtype: bool - name: rhaister_few dtype: bool - name: question dtype: string - name: reasoning dtype: string - name: answer dtype: string - name: eval_set dtype: string splits: - name: train num_bytes: 86624741 num_examples: 4686 - name: validation num_bytes: 86624741 num_examples: 4686 - name: test num_bytes: 86624741 num_examples: 4686 download_size: 60158241 dataset_size: 259874223 - config_name: sft_cell_context_scbasecount_contrastive_id_last_v1 features: - name: mode dtype: large_string - name: tissue dtype: large_string - name: tissue_A dtype: large_string - name: tissue_B dtype: large_string - name: cell_type dtype: large_string - name: cell_type_A dtype: large_string - name: cell_type_B dtype: large_string - name: question dtype: large_string - name: reasoning dtype: large_string - name: answer dtype: large_string - name: cell_file_A dtype: large_string - name: cell_file_B dtype: large_string splits: - name: train num_bytes: 20850763 num_examples: 3899 - name: validation num_bytes: 2327454 num_examples: 435 download_size: 7401548 dataset_size: 23178217 - config_name: sft_cell_context_scbasecount_contrastive_v1 features: - name: mode dtype: large_string - name: tissue dtype: large_string - name: tissue_A dtype: large_string - name: tissue_B dtype: large_string - name: cell_type dtype: large_string - name: cell_type_A dtype: large_string - name: cell_type_B dtype: large_string - name: question dtype: large_string - name: reasoning dtype: large_string - name: answer dtype: large_string - name: cell_file_A dtype: large_string - name: cell_file_B dtype: large_string splits: - name: train num_bytes: 20768884 num_examples: 3899 - name: validation num_bytes: 2318319 num_examples: 435 download_size: 7413306 dataset_size: 23087203 - config_name: sft_cell_context_scbasecount_id_first_v1 features: - name: sample_id dtype: large_string - name: cell_type dtype: large_string - name: srx_accession dtype: large_string - name: question dtype: large_string - name: reasoning dtype: large_string - name: answer dtype: large_string - name: cell_file dtype: large_string splits: - name: train num_bytes: 197095968 num_examples: 80517 - name: validation num_bytes: 24587687 num_examples: 10055 - name: test num_bytes: 24624785 num_examples: 10057 - name: ood_test num_bytes: 4614742 num_examples: 1937 download_size: 87200902 dataset_size: 250923182 - config_name: sft_cell_context_scbasecount_v1 features: - name: sample_id dtype: large_string - name: cell_type dtype: large_string - name: srx_accession dtype: large_string - name: question dtype: large_string - name: reasoning dtype: large_string - name: answer dtype: large_string - name: cell_file dtype: large_string splits: - name: train num_bytes: 196129764 num_examples: 80517 - name: validation num_bytes: 24467027 num_examples: 10055 - name: test num_bytes: 24504101 num_examples: 10057 - name: ood_test num_bytes: 4591498 num_examples: 1937 download_size: 87447391 dataset_size: 249692390 - config_name: sft_chem_pathway_v1_1_10k_full features: - name: sample_id dtype: string - name: dataset dtype: string - name: drug dtype: string - name: concentration dtype: float64 - name: cell_type dtype: string - name: pathway_name dtype: string - name: pathway_change dtype: string - name: question dtype: string - name: reasoning dtype: string - name: answer dtype: string - name: cell_file dtype: string splits: - name: train num_bytes: 224874793 num_examples: 8729 - name: validation num_bytes: 25099707 num_examples: 970 - name: test num_bytes: 25099707 num_examples: 970 download_size: 119521849 dataset_size: 275074207 - config_name: sft_chem_pathway_v1_1_10k_high_full features: - name: sample_id dtype: string - name: dataset dtype: string - name: drug dtype: string - name: concentration dtype: float64 - name: cell_type dtype: string - name: pathway_name dtype: string - name: pathway_change dtype: string - name: question dtype: string - name: reasoning dtype: string - name: answer dtype: string - name: cell_file dtype: string splits: - name: train num_bytes: 231178119 num_examples: 8722 - name: validation num_bytes: 25683073 num_examples: 966 - name: test num_bytes: 25683073 num_examples: 966 download_size: 122707365 dataset_size: 282544265 - config_name: sft_chem_pathway_v1_1_10k_mixed_full features: - name: sample_id dtype: string - name: teacher dtype: string - name: dataset dtype: string - name: drug dtype: string - name: concentration dtype: float64 - name: cell_type dtype: string - name: pathway_name dtype: string - name: pathway_change dtype: string - name: question dtype: string - name: reasoning dtype: string - name: answer dtype: string - name: cell_file dtype: string splits: - name: train num_bytes: 456209978 num_examples: 17451 - name: validation num_bytes: 50800208 num_examples: 1936 - name: test num_bytes: 25109407 num_examples: 970 download_size: 229562828 dataset_size: 532119593 - config_name: sft_chem_pathway_v1_2_50k_full features: - name: sample_id dtype: string - name: dataset dtype: string - name: drug dtype: string - name: concentration dtype: float64 - name: cell_type dtype: string - name: pathway_name dtype: string - name: pathway_change dtype: string - name: tissue_type dtype: string - name: experiment dtype: string - name: drug_targets dtype: string - name: moa_broad dtype: string - name: moa_fine dtype: string - name: cell_file dtype: string - name: pert dtype: string - name: pert_rank dtype: int64 - name: row_rank dtype: int64 - name: n_dir_in_universe dtype: int64 - name: rhaister_zero dtype: bool - name: rhaister_few dtype: bool - name: question dtype: string - name: reasoning dtype: string - name: answer dtype: string - name: eval_set dtype: string splits: - name: train num_bytes: 1118716883 num_examples: 46298 - name: validation num_bytes: 58756795 num_examples: 2437 - name: test num_bytes: 416857258 num_examples: 23381 download_size: 600357059 dataset_size: 1594330936 - config_name: sft_chem_pathway_v1_2_50k_full_answerfirst features: - name: sample_id dtype: string - name: dataset dtype: string - name: drug dtype: string - name: concentration dtype: float64 - name: cell_type dtype: string - name: pathway_name dtype: string - name: pathway_change dtype: string - name: question dtype: string - name: reasoning dtype: string - name: answer dtype: string - name: cell_file dtype: string splits: - name: train num_bytes: 1118104959 num_examples: 46298 - name: validation num_bytes: 58724958 num_examples: 2437 - name: test num_bytes: 58724958 num_examples: 2437 download_size: 525730642 dataset_size: 1235554875 - config_name: sft_chem_pathway_v1_2_50k_full_labelonly features: - name: sample_id dtype: string - name: dataset dtype: string - name: drug dtype: string - name: concentration dtype: float64 - name: cell_type dtype: string - name: pathway_name dtype: string - name: pathway_change dtype: string - name: tissue_type dtype: string - name: experiment dtype: string - name: drug_targets dtype: string - name: moa_broad dtype: string - name: moa_fine dtype: string - name: cell_file dtype: string - name: pert dtype: string - name: pert_rank dtype: int64 - name: row_rank dtype: int64 - name: n_dir_in_universe dtype: int64 - name: rhaister_zero dtype: bool - name: rhaister_few dtype: bool - name: question dtype: string - name: reasoning dtype: string - name: answer dtype: string - name: eval_set dtype: string splits: - name: train num_bytes: 825651725 num_examples: 46298 - name: validation num_bytes: 43339490 num_examples: 2437 - name: test num_bytes: 416857258 num_examples: 23381 download_size: 417234535 dataset_size: 1285848473 - config_name: sft_chem_pathway_v1_2_50k_full_labelonly_v2bench features: - name: sample_id dtype: string - name: drug dtype: string - name: concentration dtype: float64 - name: cell_type dtype: string - name: pathway_name dtype: string - name: pathway_change dtype: string - name: tissue_type dtype: string - name: experiment dtype: string - name: drug_targets dtype: string - name: moa_broad dtype: string - name: moa_fine dtype: string - name: cell_file dtype: string - name: pert dtype: string - name: pert_rank dtype: int64 - name: row_rank dtype: int64 - name: n_dir_in_universe dtype: int64 - name: question dtype: string - name: reasoning dtype: string - name: answer dtype: string - name: eval_set dtype: string splits: - name: train num_bytes: 825223467 num_examples: 46298 - name: validation num_bytes: 43316947 num_examples: 2437 - name: test num_bytes: 530637512 num_examples: 29213 download_size: 516796172 dataset_size: 1399177926 - config_name: sft_chem_pathway_v1_2_50k_full_v2bench features: - name: sample_id dtype: string - name: drug dtype: string - name: concentration dtype: float64 - name: cell_type dtype: string - name: pathway_name dtype: string - name: pathway_change dtype: string - name: tissue_type dtype: string - name: experiment dtype: string - name: drug_targets dtype: string - name: moa_broad dtype: string - name: moa_fine dtype: string - name: cell_file dtype: string - name: pert dtype: string - name: pert_rank dtype: int64 - name: row_rank dtype: int64 - name: n_dir_in_universe dtype: int64 - name: question dtype: string - name: reasoning dtype: string - name: answer dtype: string - name: eval_set dtype: string splits: - name: train num_bytes: 1118288625 num_examples: 46298 - name: validation num_bytes: 58734252 num_examples: 2437 - name: test num_bytes: 532799274 num_examples: 29213 download_size: 699942157 dataset_size: 1709822151 - config_name: sft_gene_pathway_v6_2_1k features: - name: sample_id dtype: large_string - name: gene_target dtype: large_string - name: cell_type dtype: large_string - name: pathway_name dtype: large_string - name: pathway_change dtype: large_string - name: pathway_magnitude dtype: large_string - name: question dtype: large_string - name: reasoning dtype: large_string - name: answer dtype: large_string - name: cell_file dtype: large_string splits: - name: train num_bytes: 9012157 num_examples: 881 - name: validation num_bytes: 469557 num_examples: 47 - name: test num_bytes: 469557 num_examples: 47 download_size: 4723007 dataset_size: 9951271 - config_name: sft_gene_pathway_v7_3_5k features: - name: sample_id dtype: large_string - name: gene_target dtype: large_string - name: cell_type dtype: large_string - name: pathway_name dtype: large_string - name: pathway_change dtype: large_string - name: pathway_magnitude dtype: large_string - name: question dtype: large_string - name: reasoning dtype: large_string - name: answer dtype: large_string - name: cell_file dtype: large_string splits: - name: train num_bytes: 54356168 num_examples: 5320 - name: validation num_bytes: 6074526 num_examples: 592 - name: test num_bytes: 6074526 num_examples: 592 download_size: 32979010 dataset_size: 66505220 - config_name: sft_gene_pathway_v7_3_5k_full features: - name: sample_id dtype: large_string - name: gene_target dtype: large_string - name: cell_type dtype: large_string - name: pathway_name dtype: large_string - name: pathway_change dtype: large_string - name: pathway_magnitude dtype: large_string - name: question dtype: large_string - name: reasoning dtype: large_string - name: answer dtype: large_string - 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name: validation num_bytes: 66250904 num_examples: 4648 - name: test num_bytes: 282447366 num_examples: 45209 download_size: 696665547 dataset_size: 1608693456 - config_name: sft_gene_pathway_v7_6_full100k_holdlines_answerfirst features: - name: sample_id dtype: string - name: dataset dtype: string - name: gene_target dtype: string - name: cell_type dtype: string - name: pathway_name dtype: string - name: pathway_change dtype: string - name: tissue_type dtype: string - name: experiment dtype: string - name: cell_file dtype: string - name: pert dtype: string - name: pert_rank dtype: int64 - name: row_rank dtype: int64 - name: n_dir_in_universe dtype: int64 - name: rhaister_zero dtype: bool - name: rhaister_few dtype: bool - name: question dtype: string - name: reasoning dtype: string - name: answer dtype: string - name: eval_set dtype: string splits: - name: train num_bytes: 1266065256 num_examples: 88312 - name: validation num_bytes: 66570300 num_examples: 4648 - name: test num_bytes: 282447366 num_examples: 45209 download_size: 698125277 dataset_size: 1615082922 - 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name: pathway_name dtype: string - name: pathway_change dtype: string - name: tissue_type dtype: string - name: experiment dtype: string - name: cell_file dtype: string - name: pert dtype: string - name: pert_rank dtype: int64 - name: row_rank dtype: int64 - name: n_dir_in_universe dtype: int64 - name: rhaister_zero dtype: bool - name: rhaister_few dtype: bool - name: question dtype: string - name: reasoning dtype: string - name: answer dtype: string - name: eval_set dtype: string splits: - name: train num_bytes: 1304599573 num_examples: 92661 - name: validation num_bytes: 144567790 num_examples: 10296 - name: test num_bytes: 309025650 num_examples: 48855 download_size: 761502736 dataset_size: 1758193013 - config_name: sft_gene_pathway_v7_6_unch_far features: - name: sample_id dtype: string - name: dataset dtype: string - name: gene_target dtype: string - name: cell_type dtype: string - name: pathway_name dtype: string - name: pathway_change dtype: string - name: question dtype: string - 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name: validation num_bytes: 5929683 num_examples: 472 - name: test num_bytes: 282849702 num_examples: 45209 download_size: 107247216 dataset_size: 400730345 - config_name: sft_gene_pathway_v8_10_10k_v810_hightraces_stripped features: - name: sample_id dtype: string - name: dataset dtype: string - name: gene_target dtype: string - name: cell_type dtype: string - name: pathway_name dtype: string - name: pathway_change dtype: string - name: tissue_type dtype: string - name: experiment dtype: string - name: cell_file dtype: string - name: pert dtype: string - name: pert_rank dtype: int64 - name: row_rank dtype: int64 - name: n_dir_in_universe dtype: int64 - name: rhaister_zero dtype: bool - name: rhaister_few dtype: bool - name: question dtype: string - name: reasoning dtype: string - name: answer dtype: string - name: eval_set dtype: string splits: - name: train num_bytes: 101533585 num_examples: 8941 - name: validation num_bytes: 5383526 num_examples: 472 - name: test num_bytes: 282849702 num_examples: 45209 download_size: 100881463 dataset_size: 389766813 - config_name: sft_gene_pathway_v8_10_10k_v810_mediumtraces features: - name: sample_id dtype: string - name: dataset dtype: string - name: gene_target dtype: string - name: cell_type dtype: string - name: pathway_name dtype: string - name: pathway_change dtype: string - name: tissue_type dtype: string - name: experiment dtype: string - name: cell_file dtype: string - name: pert dtype: string - name: pert_rank dtype: int64 - name: row_rank dtype: int64 - name: n_dir_in_universe dtype: int64 - name: rhaister_zero dtype: bool - name: rhaister_few dtype: bool - name: question dtype: string - name: reasoning dtype: string - name: answer dtype: string - name: eval_set dtype: string splits: - name: train num_bytes: 112170483 num_examples: 8933 - name: validation num_bytes: 5914703 num_examples: 470 - name: test num_bytes: 282849702 num_examples: 45209 download_size: 107016509 dataset_size: 400934888 - config_name: sft_gene_pathway_v9_9_gpt61_high_v7matched92960 features: - name: sample_id dtype: string - name: dataset dtype: string - name: gene_target dtype: string - name: cell_type dtype: string - name: pathway_name dtype: string - name: pathway_change dtype: string - name: tissue_type dtype: string - name: experiment dtype: string - name: cell_file dtype: string - name: pert dtype: string - name: pert_rank dtype: int64 - name: row_rank dtype: int64 - name: n_dir_in_universe dtype: int64 - name: rhaister_zero dtype: bool - name: rhaister_few dtype: bool - name: question dtype: string - name: reasoning dtype: string - name: answer dtype: string - name: eval_set dtype: string splits: - name: train num_bytes: 1074266436 num_examples: 85008 - name: validation num_bytes: 56783955 num_examples: 4486 - name: test num_bytes: 282447366 num_examples: 45209 download_size: 549570137 dataset_size: 1413497757 - config_name: sft_gene_pathway_v9_9_gpt61_high_v7matched92960_celltext features: - name: sample_id dtype: string - name: dataset dtype: string - name: gene_target dtype: string - name: cell_type dtype: string - name: pathway_name dtype: string - name: pathway_change dtype: string - name: tissue_type dtype: string - name: experiment dtype: string - name: cell_file dtype: string - name: pert dtype: string - name: pert_rank dtype: int64 - name: row_rank dtype: int64 - name: n_dir_in_universe dtype: int64 - name: rhaister_zero dtype: bool - name: rhaister_few dtype: bool - name: question dtype: string - name: reasoning dtype: string - name: answer dtype: string - name: eval_set dtype: string splits: - name: train num_bytes: 1158276130 num_examples: 85008 - name: validation num_bytes: 61216881 num_examples: 4486 - name: test num_bytes: 322714317 num_examples: 45209 download_size: 604631097 dataset_size: 1542207328 - config_name: zeroshot_hepg2_v1 features: - name: sample_id dtype: string - name: dataset dtype: string - name: gene_target dtype: string - name: cell_type dtype: string - name: pathway_name dtype: string - name: pathway_change dtype: string - name: tissue_type dtype: string - name: experiment dtype: string - name: cell_file dtype: string - name: pert dtype: string splits: - name: test num_bytes: 2050156 num_examples: 6440 download_size: 248267 dataset_size: 2050156 - config_name: zeroshot_hepg2_v1__sft_gene_pathway_v7_6_100k features: - name: sample_id dtype: string - name: dataset dtype: string - name: gene_target dtype: string - name: cell_type dtype: string - name: pathway_name dtype: string - name: pathway_change dtype: string - name: tissue_type dtype: string - name: experiment dtype: string - name: cell_file dtype: string - name: pert dtype: string - name: question dtype: string - name: reasoning dtype: string - name: answer dtype: string splits: - name: train num_bytes: 37308530 num_examples: 6440 - name: validation num_bytes: 37308530 num_examples: 6440 - name: test num_bytes: 37308530 num_examples: 6440 download_size: 20912697 dataset_size: 111925590 - config_name: zeroshot_ipsc_v1 features: - name: sample_id dtype: string - name: dataset dtype: string - name: gene_target dtype: string - name: cell_type dtype: string - name: pathway_name dtype: string - name: pathway_change dtype: string - name: tissue_type dtype: string - name: experiment dtype: string - name: cell_file dtype: string - name: pert dtype: string splits: - name: test num_bytes: 2348016 num_examples: 7560 download_size: 356743 dataset_size: 2348016 - config_name: zeroshot_ipsc_v1__sft_gene_pathway_v7_6_100k features: - name: sample_id dtype: string - name: dataset dtype: string - name: gene_target dtype: string - name: cell_type dtype: string - name: pathway_name dtype: string - name: pathway_change dtype: string - name: tissue_type dtype: string - name: experiment dtype: string - name: cell_file dtype: string - name: pert dtype: string - name: question dtype: string - name: reasoning dtype: string - name: answer dtype: string splits: - name: train num_bytes: 44377597 num_examples: 7560 - name: validation num_bytes: 44377597 num_examples: 7560 - name: test num_bytes: 44377597 num_examples: 7560 download_size: 24622137 dataset_size: 133132791 - config_name: zeroshot_norman_v1 features: - name: sample_id dtype: string - name: dataset dtype: string - name: gene_target dtype: string - name: cell_type dtype: string - name: pathway_name dtype: string - name: pathway_change dtype: string - name: tissue_type dtype: string - name: experiment dtype: string - name: cell_file dtype: string - name: pert dtype: string splits: - name: test num_bytes: 1123497 num_examples: 4142 download_size: 162310 dataset_size: 1123497 - config_name: zeroshot_norman_v1__sft_gene_pathway_v7_6_100k features: - name: sample_id dtype: string - name: dataset dtype: string - name: gene_target dtype: string - name: cell_type dtype: string - name: pathway_name dtype: string - name: pathway_change dtype: string - name: tissue_type dtype: string - name: experiment dtype: string - name: cell_file dtype: string - name: pert dtype: string - name: question dtype: string - name: reasoning dtype: string - name: answer dtype: string splits: - name: train num_bytes: 28412274 num_examples: 4142 - name: validation num_bytes: 28412274 num_examples: 4142 - name: test num_bytes: 28412274 num_examples: 4142 download_size: 16070286 dataset_size: 85236822 - config_name: zeroshot_papalexi_v1 features: - name: sample_id dtype: string - name: dataset dtype: string - name: gene_target dtype: string - name: cell_type dtype: string - name: pathway_name dtype: string - name: pathway_change dtype: string - name: tissue_type dtype: string - name: experiment dtype: string - name: cell_file dtype: string - name: pert dtype: string splits: - name: test num_bytes: 1448990 num_examples: 5000 download_size: 191657 dataset_size: 1448990 - config_name: zeroshot_xu2026_v1 features: - name: sample_id dtype: string - name: dataset dtype: string - name: gene_target dtype: string - name: cell_type dtype: string - name: pathway_name dtype: string - name: pathway_change dtype: string - name: tissue_type dtype: string - name: experiment dtype: string - name: cell_file dtype: string - name: pert dtype: string splits: - name: test num_bytes: 1156696 num_examples: 3646 download_size: 155626 dataset_size: 1156696 - config_name: zeroshot_xu2026_v1__sft_gene_pathway_v7_6_100k features: - name: sample_id dtype: string - name: dataset dtype: string - name: gene_target dtype: string - name: cell_type dtype: string - name: pathway_name dtype: string - name: pathway_change dtype: string - name: tissue_type dtype: string - name: experiment dtype: string - name: cell_file dtype: string - name: pert dtype: string - name: question dtype: string - name: reasoning dtype: string - name: answer dtype: string splits: - name: train num_bytes: 26409658 num_examples: 3646 - name: validation num_bytes: 26409658 num_examples: 3646 - name: test num_bytes: 26409658 num_examples: 3646 download_size: 15374448 dataset_size: 79228974 configs: - config_name: benchmark_chem_tahoe_v1 data_files: - split: train path: benchmark_chem_tahoe_v1/train-* - split: validation path: benchmark_chem_tahoe_v1/validation-* - split: test path: benchmark_chem_tahoe_v1/test-* - config_name: benchmark_chem_tahoe_v2 data_files: - split: train path: benchmark_chem_tahoe_v2/train-* - split: validation path: benchmark_chem_tahoe_v2/validation-* - split: test path: benchmark_chem_tahoe_v2/test-* - config_name: benchmark_genetic_v1_kaufman data_files: - split: test path: benchmark_genetic_v1_kaufman/test-* - config_name: benchmark_genetic_v1_marson data_files: - split: test path: benchmark_genetic_v1_marson/test-* - config_name: benchmark_genetic_v1_nadig data_files: - split: test path: benchmark_genetic_v1_nadig/test-* - config_name: benchmark_genetic_v1_xaira_orion data_files: - split: test path: benchmark_genetic_v1_xaira_orion/test-* - config_name: benchmark_genetic_v1_xaira_pisces data_files: - split: test path: benchmark_genetic_v1_xaira_pisces/test-* - config_name: cleansplit_indist_kaufman data_files: - split: train path: cleansplit_indist_kaufman/train-* - split: validation path: cleansplit_indist_kaufman/validation-* - split: test path: cleansplit_indist_kaufman/test-* - config_name: cleansplit_indist_marson data_files: - split: train path: cleansplit_indist_marson/train-* - split: validation path: cleansplit_indist_marson/validation-* - split: test path: cleansplit_indist_marson/test-* - config_name: cleansplit_indist_minimal_kaufman data_files: - split: train path: cleansplit_indist_minimal_kaufman/train-* - split: validation path: cleansplit_indist_minimal_kaufman/validation-* - split: test path: cleansplit_indist_minimal_kaufman/test-* - config_name: cleansplit_indist_minimal_marson data_files: - split: train path: cleansplit_indist_minimal_marson/train-* - split: validation path: cleansplit_indist_minimal_marson/validation-* - split: test path: cleansplit_indist_minimal_marson/test-* - config_name: cleansplit_indist_minimal_nadig data_files: - split: train path: cleansplit_indist_minimal_nadig/train-* - split: validation path: cleansplit_indist_minimal_nadig/validation-* - split: test path: cleansplit_indist_minimal_nadig/test-* - config_name: cleansplit_indist_minimal_papalexi data_files: - split: train path: cleansplit_indist_minimal_papalexi/train-* - split: validation path: cleansplit_indist_minimal_papalexi/validation-* - split: test path: cleansplit_indist_minimal_papalexi/test-* - config_name: cleansplit_indist_minimal_xaira_orion data_files: - split: train path: cleansplit_indist_minimal_xaira_orion/train-* - split: validation path: cleansplit_indist_minimal_xaira_orion/validation-* - split: test path: cleansplit_indist_minimal_xaira_orion/test-* - config_name: cleansplit_indist_minimal_xaira_pisces data_files: - split: train path: cleansplit_indist_minimal_xaira_pisces/train-* - split: validation path: cleansplit_indist_minimal_xaira_pisces/validation-* - split: test path: cleansplit_indist_minimal_xaira_pisces/test-* - config_name: cleansplit_indist_minimal_xu2026 data_files: - split: train path: cleansplit_indist_minimal_xu2026/train-* - split: validation path: cleansplit_indist_minimal_xu2026/validation-* - split: test path: cleansplit_indist_minimal_xu2026/test-* - config_name: cleansplit_indist_nadig data_files: - split: train path: cleansplit_indist_nadig/train-* - split: validation path: cleansplit_indist_nadig/validation-* - split: test path: cleansplit_indist_nadig/test-* - config_name: cleansplit_indist_papalexi data_files: - split: train path: cleansplit_indist_papalexi/train-* - split: validation path: cleansplit_indist_papalexi/validation-* - split: test path: cleansplit_indist_papalexi/test-* - config_name: cleansplit_indist_xaira_orion data_files: - split: train path: cleansplit_indist_xaira_orion/train-* - split: validation path: cleansplit_indist_xaira_orion/validation-* - split: test path: cleansplit_indist_xaira_orion/test-* - config_name: cleansplit_indist_xaira_pisces data_files: - split: train path: cleansplit_indist_xaira_pisces/train-* - split: validation path: cleansplit_indist_xaira_pisces/validation-* - split: test path: cleansplit_indist_xaira_pisces/test-* - config_name: cleansplit_indist_xu2026 data_files: - split: train path: cleansplit_indist_xu2026/train-* - split: validation path: cleansplit_indist_xu2026/validation-* - split: test path: cleansplit_indist_xu2026/test-* - config_name: grpo_gene_pathway_v1 data_files: - split: train path: grpo_gene_pathway_v1/train-* - split: test path: grpo_gene_pathway_v1/test-* - config_name: probe_chem_retrieval_v1 data_files: - split: train path: probe_chem_retrieval_v1/train-* - split: validation path: probe_chem_retrieval_v1/validation-* - split: test path: probe_chem_retrieval_v1/test-* - config_name: probe_chem_retrieval_v1_shuf data_files: - split: train path: probe_chem_retrieval_v1_shuf/train-* - split: validation path: probe_chem_retrieval_v1_shuf/validation-* - split: test path: probe_chem_retrieval_v1_shuf/test-* - config_name: sft_cell_context_scbasecount_contrastive_id_last_v1 data_files: - split: train path: sft_cell_context_scbasecount_contrastive_id_last_v1/train-* - split: validation path: sft_cell_context_scbasecount_contrastive_id_last_v1/validation-* - config_name: sft_cell_context_scbasecount_contrastive_v1 data_files: - split: train path: sft_cell_context_scbasecount_contrastive_v1/train-* - split: validation path: sft_cell_context_scbasecount_contrastive_v1/validation-* - config_name: sft_cell_context_scbasecount_id_first_v1 data_files: - split: train path: sft_cell_context_scbasecount_id_first_v1/train-* - split: validation path: sft_cell_context_scbasecount_id_first_v1/validation-* - split: test path: sft_cell_context_scbasecount_id_first_v1/test-* - split: ood_test path: sft_cell_context_scbasecount_id_first_v1/ood_test-* - config_name: sft_cell_context_scbasecount_v1 data_files: - split: train path: sft_cell_context_scbasecount_v1/train-* - split: validation path: sft_cell_context_scbasecount_v1/validation-* - split: test path: sft_cell_context_scbasecount_v1/test-* - split: ood_test path: sft_cell_context_scbasecount_v1/ood_test-* - config_name: sft_chem_pathway_v1_1_10k_full data_files: - split: train path: sft_chem_pathway_v1_1_10k_full/train-* - split: validation path: sft_chem_pathway_v1_1_10k_full/validation-* - split: test path: sft_chem_pathway_v1_1_10k_full/test-* - config_name: sft_chem_pathway_v1_1_10k_high_full data_files: - split: train path: sft_chem_pathway_v1_1_10k_high_full/train-* - split: validation path: sft_chem_pathway_v1_1_10k_high_full/validation-* - split: test path: sft_chem_pathway_v1_1_10k_high_full/test-* - config_name: sft_chem_pathway_v1_1_10k_mixed_full data_files: - split: train path: sft_chem_pathway_v1_1_10k_mixed_full/train-* - split: validation path: sft_chem_pathway_v1_1_10k_mixed_full/validation-* - split: test path: sft_chem_pathway_v1_1_10k_mixed_full/test-* - config_name: sft_chem_pathway_v1_2_50k_full data_files: - split: train path: sft_chem_pathway_v1_2_50k_full/train-* - split: validation path: sft_chem_pathway_v1_2_50k_full/validation-* - split: test path: sft_chem_pathway_v1_2_50k_full/test-* - config_name: sft_chem_pathway_v1_2_50k_full_answerfirst data_files: - split: train path: sft_chem_pathway_v1_2_50k_full_answerfirst/train-* - split: validation path: sft_chem_pathway_v1_2_50k_full_answerfirst/validation-* - split: test path: sft_chem_pathway_v1_2_50k_full_answerfirst/test-* - config_name: sft_chem_pathway_v1_2_50k_full_labelonly data_files: - split: train path: sft_chem_pathway_v1_2_50k_full_labelonly/train-* - split: validation path: sft_chem_pathway_v1_2_50k_full_labelonly/validation-* - split: test path: sft_chem_pathway_v1_2_50k_full_labelonly/test-* - config_name: sft_chem_pathway_v1_2_50k_full_labelonly_v2bench data_files: - split: train path: sft_chem_pathway_v1_2_50k_full_labelonly_v2bench/train-* - split: validation path: sft_chem_pathway_v1_2_50k_full_labelonly_v2bench/validation-* - split: test path: sft_chem_pathway_v1_2_50k_full_labelonly_v2bench/test-* - config_name: sft_chem_pathway_v1_2_50k_full_v2bench data_files: - split: train path: sft_chem_pathway_v1_2_50k_full_v2bench/train-* - split: validation path: sft_chem_pathway_v1_2_50k_full_v2bench/validation-* - split: test path: sft_chem_pathway_v1_2_50k_full_v2bench/test-* - config_name: sft_gene_pathway_v6_2_1k data_files: - split: train path: sft_gene_pathway_v6_2_1k/train-* - split: validation path: sft_gene_pathway_v6_2_1k/validation-* - split: test path: sft_gene_pathway_v6_2_1k/test-* - config_name: sft_gene_pathway_v7_3_5k data_files: - split: train path: sft_gene_pathway_v7_3_5k/train-* - split: validation path: sft_gene_pathway_v7_3_5k/validation-* - split: test path: sft_gene_pathway_v7_3_5k/test-* - config_name: sft_gene_pathway_v7_3_5k_full data_files: - split: train path: sft_gene_pathway_v7_3_5k_full/train-* - split: validation path: sft_gene_pathway_v7_3_5k_full/validation-* - split: test path: sft_gene_pathway_v7_3_5k_full/test-* - config_name: sft_gene_pathway_v7_5_50k data_files: - split: train path: sft_gene_pathway_v7_5_50k/train-* - split: validation path: sft_gene_pathway_v7_5_50k/validation-* - split: test path: sft_gene_pathway_v7_5_50k/test-* - config_name: sft_gene_pathway_v7_5_50k_answeronly data_files: - split: train path: sft_gene_pathway_v7_5_50k_answeronly/train-* - split: validation path: sft_gene_pathway_v7_5_50k_answeronly/validation-* - split: test path: sft_gene_pathway_v7_5_50k_answeronly/test-* - config_name: sft_gene_pathway_v7_5_50k_celldesc data_files: - split: train path: sft_gene_pathway_v7_5_50k_celldesc/train-* - split: validation path: sft_gene_pathway_v7_5_50k_celldesc/validation-* - split: test path: sft_gene_pathway_v7_5_50k_celldesc/test-* - config_name: sft_gene_pathway_v7_5_50k_full data_files: - split: train path: sft_gene_pathway_v7_5_50k_full/train-* - split: validation path: sft_gene_pathway_v7_5_50k_full/validation-* - split: test path: sft_gene_pathway_v7_5_50k_full/test-* - config_name: sft_gene_pathway_v7_5_50k_full_answeronly data_files: - split: train path: sft_gene_pathway_v7_5_50k_full_answeronly/train-* - split: validation path: sft_gene_pathway_v7_5_50k_full_answeronly/validation-* - split: test path: sft_gene_pathway_v7_5_50k_full_answeronly/test-* - config_name: sft_gene_pathway_v7_5_50k_full_blinddesc data_files: - split: train path: sft_gene_pathway_v7_5_50k_full_blinddesc/train-* - split: validation path: sft_gene_pathway_v7_5_50k_full_blinddesc/validation-* - split: test path: sft_gene_pathway_v7_5_50k_full_blinddesc/test-* - config_name: sft_gene_pathway_v7_5_50k_full_celldesc data_files: - split: train path: sft_gene_pathway_v7_5_50k_full_celldesc/train-* - split: validation path: sft_gene_pathway_v7_5_50k_full_celldesc/validation-* - split: test path: sft_gene_pathway_v7_5_50k_full_celldesc/test-* - config_name: sft_gene_pathway_v7_5_50k_full_label data_files: - split: train path: sft_gene_pathway_v7_5_50k_full_label/train-* - split: validation path: sft_gene_pathway_v7_5_50k_full_label/validation-* - split: test path: sft_gene_pathway_v7_5_50k_full_label/test-* - config_name: sft_gene_pathway_v7_5_50k_full_labelonly data_files: - split: train path: sft_gene_pathway_v7_5_50k_full_labelonly/train-* - split: validation path: sft_gene_pathway_v7_5_50k_full_labelonly/validation-* - split: test path: sft_gene_pathway_v7_5_50k_full_labelonly/test-* - config_name: sft_gene_pathway_v7_5_50k_labelonly data_files: - split: train path: sft_gene_pathway_v7_5_50k_labelonly/train-* - split: validation path: sft_gene_pathway_v7_5_50k_labelonly/validation-* - split: test path: sft_gene_pathway_v7_5_50k_labelonly/test-* - config_name: sft_gene_pathway_v7_6_floor_off data_files: - split: train path: sft_gene_pathway_v7_6_floor_off/train-* - split: validation path: sft_gene_pathway_v7_6_floor_off/validation-* - split: test path: sft_gene_pathway_v7_6_floor_off/test-* - config_name: sft_gene_pathway_v7_6_floor_on data_files: - split: train path: sft_gene_pathway_v7_6_floor_on/train-* - split: validation path: sft_gene_pathway_v7_6_floor_on/validation-* - split: test path: sft_gene_pathway_v7_6_floor_on/test-* - config_name: sft_gene_pathway_v7_6_full100k data_files: - split: train path: sft_gene_pathway_v7_6_full100k/train-* - split: validation path: sft_gene_pathway_v7_6_full100k/validation-* - split: test path: sft_gene_pathway_v7_6_full100k/test-* - config_name: sft_gene_pathway_v7_6_full100k_holdlines data_files: - split: train path: sft_gene_pathway_v7_6_full100k_holdlines/train-* - split: validation path: sft_gene_pathway_v7_6_full100k_holdlines/validation-* - split: test path: sft_gene_pathway_v7_6_full100k_holdlines/test-* - config_name: sft_gene_pathway_v7_6_full100k_holdlines_answerfirst data_files: - split: train path: sft_gene_pathway_v7_6_full100k_holdlines_answerfirst/train-* - split: validation path: sft_gene_pathway_v7_6_full100k_holdlines_answerfirst/validation-* - split: test path: sft_gene_pathway_v7_6_full100k_holdlines_answerfirst/test-* - config_name: sft_gene_pathway_v7_6_full100k_holdlines_labelonly data_files: - split: train path: sft_gene_pathway_v7_6_full100k_holdlines_labelonly/train-* - split: validation path: sft_gene_pathway_v7_6_full100k_holdlines_labelonly/validation-* - split: test path: sft_gene_pathway_v7_6_full100k_holdlines_labelonly/test-* - config_name: sft_gene_pathway_v7_6_full100k_holdout data_files: - split: train path: sft_gene_pathway_v7_6_full100k_holdout/train-* - split: validation path: sft_gene_pathway_v7_6_full100k_holdout/validation-* - split: test path: sft_gene_pathway_v7_6_full100k_holdout/test-* - config_name: sft_gene_pathway_v7_6_full100k_relabel data_files: - split: train path: sft_gene_pathway_v7_6_full100k_relabel/train-* - split: validation path: sft_gene_pathway_v7_6_full100k_relabel/validation-* - split: test path: sft_gene_pathway_v7_6_full100k_relabel/test-* - config_name: sft_gene_pathway_v7_6_unch_far data_files: - split: train path: sft_gene_pathway_v7_6_unch_far/train-* - split: validation path: sft_gene_pathway_v7_6_unch_far/validation-* - split: test path: sft_gene_pathway_v7_6_unch_far/test-* - config_name: sft_gene_pathway_v7_6_unch_near data_files: - split: train path: sft_gene_pathway_v7_6_unch_near/train-* - split: validation path: sft_gene_pathway_v7_6_unch_near/validation-* - split: test path: sft_gene_pathway_v7_6_unch_near/test-* - config_name: sft_gene_pathway_v8_10_10k_labelonly data_files: - split: train path: sft_gene_pathway_v8_10_10k_labelonly/train-* - split: validation path: sft_gene_pathway_v8_10_10k_labelonly/validation-* - split: test path: sft_gene_pathway_v8_10_10k_labelonly/test-* - config_name: sft_gene_pathway_v8_10_10k_truezs data_files: - split: train path: sft_gene_pathway_v8_10_10k_truezs/train-* - split: validation path: sft_gene_pathway_v8_10_10k_truezs/validation-* - split: test path: sft_gene_pathway_v8_10_10k_truezs/test-* - config_name: sft_gene_pathway_v8_10_10k_v76traces data_files: - split: train path: sft_gene_pathway_v8_10_10k_v76traces/train-* - split: validation path: sft_gene_pathway_v8_10_10k_v76traces/validation-* - split: test path: sft_gene_pathway_v8_10_10k_v76traces/test-* - config_name: sft_gene_pathway_v8_10_10k_v810_hightraces data_files: - split: train path: sft_gene_pathway_v8_10_10k_v810_hightraces/train-* - split: validation path: sft_gene_pathway_v8_10_10k_v810_hightraces/validation-* - split: test path: sft_gene_pathway_v8_10_10k_v810_hightraces/test-* - config_name: sft_gene_pathway_v8_10_10k_v810_hightraces_answerfirst data_files: - split: train path: sft_gene_pathway_v8_10_10k_v810_hightraces_answerfirst/train-* - split: validation path: sft_gene_pathway_v8_10_10k_v810_hightraces_answerfirst/validation-* - split: test path: sft_gene_pathway_v8_10_10k_v810_hightraces_answerfirst/test-* - config_name: sft_gene_pathway_v8_10_10k_v810_hightraces_stripped data_files: - split: train path: sft_gene_pathway_v8_10_10k_v810_hightraces_stripped/train-* - split: validation path: sft_gene_pathway_v8_10_10k_v810_hightraces_stripped/validation-* - split: test path: sft_gene_pathway_v8_10_10k_v810_hightraces_stripped/test-* - config_name: sft_gene_pathway_v8_10_10k_v810_mediumtraces data_files: - split: train path: sft_gene_pathway_v8_10_10k_v810_mediumtraces/train-* - split: validation path: sft_gene_pathway_v8_10_10k_v810_mediumtraces/validation-* - split: test path: sft_gene_pathway_v8_10_10k_v810_mediumtraces/test-* - config_name: sft_gene_pathway_v9_9_gpt61_high_v7matched92960 data_files: - split: train path: sft_gene_pathway_v9_9_gpt61_high_v7matched92960/train-* - split: validation path: sft_gene_pathway_v9_9_gpt61_high_v7matched92960/validation-* - split: test path: sft_gene_pathway_v9_9_gpt61_high_v7matched92960/test-* - config_name: sft_gene_pathway_v9_9_gpt61_high_v7matched92960_celltext data_files: - split: train path: sft_gene_pathway_v9_9_gpt61_high_v7matched92960_celltext/train-* - split: validation path: sft_gene_pathway_v9_9_gpt61_high_v7matched92960_celltext/validation-* - split: test path: sft_gene_pathway_v9_9_gpt61_high_v7matched92960_celltext/test-* - config_name: zeroshot_hepg2_v1 data_files: - split: test path: zeroshot_hepg2_v1/test-* - config_name: zeroshot_ipsc_v1 data_files: - split: test path: zeroshot_ipsc_v1/test-* - config_name: zeroshot_norman_v1 data_files: - split: test path: zeroshot_norman_v1/test-* - config_name: zeroshot_papalexi_v1 data_files: - split: test path: zeroshot_papalexi_v1/test-* - config_name: zeroshot_xu2026_v1 data_files: - split: test path: zeroshot_xu2026_v1/test-* ---
---
dataset_info:
- config_name: benchmark_chem_tahoe_v1
features:
- name: sample_id
dtype: string
- name: dataset
dtype: string
- name: drug
dtype: string
- name: concentration
dtype: float64
- name: cell_type
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- name: pathway_name
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- name: pathway_change
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- name: tissue_type
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- name: experiment
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- name: drug_targets
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- name: moa_broad
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- name: moa_fine
dtype: string
- name: cell_file
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- name: pert
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- name: n_dir_in_universe
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- name: rhaister_zero
dtype: bool
- name: rhaister_few
dtype: bool
splits:
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num_examples: 23381
- name: validation
num_bytes: 9018886
num_examples: 23381
- name: test
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num_examples: 23381
download_size: 2521710
dataset_size: 27056658
- config_name: benchmark_chem_tahoe_v2
features:
- name: sample_id
dtype: string
- name: drug
dtype: string
- name: concentration
dtype: float64
- name: cell_type
dtype: string
- name: pathway_name
dtype: string
- name: pathway_change
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- name: tissue_type
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- name: experiment
dtype: string
- name: drug_targets
dtype: string
- name: moa_broad
dtype: string
- name: moa_fine
dtype: string
- name: cell_file
dtype: string
- name: pert
dtype: string
- name: pert_rank
dtype: int64
- name: row_rank
dtype: int64
- name: n_dir_in_universe
dtype: int64
splits:
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num_examples: 29213
- name: validation
num_bytes: 11217085
num_examples: 29213
- name: test
num_bytes: 11217085
num_examples: 29213
download_size: 4536342
dataset_size: 33651255