| Train test splits can be found in `chainsaw_cath1363_train_test_splits.json` | |
| Ground truth domains, Chainsaw predictions and performance metrics on the CATH1363 test set can be found in `chainsaw_model_v3_on_cath1363_test.csv` | |
| Chainsaw predictions on the CATH1363 test set can be reproduced with the following command: | |
| `python scripts/get_predictions.py --structure_directory path/to/pdbs --model_dir weight/model_v3 --config_dir conf/model_v3 --renumber_pdbs -o output.tsv --use_first_chain --no_post_processing` | |
| Note that the predictions in `chainsaw_model_v3_on_cath1363_test.csv` assume zero-indexed pdbs with consecutive indices for all residues in the pdb file. | |
| `|` separates different domains | |
| `_` separates different segments in the same domain | |