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# InstructCell
**InstructCell** is a multi-modal AI copilot that integrates natural language with single-cell RNA sequencing data, enabling researchers to perform tasks like cell type annotation, pseudo-cell generation, and drug sensitivity prediction through intuitive text commands.
By leveraging a specialized multi-modal architecture and our multi-modal single-cell instruction dataset, InstructCell reduces technical barriers and enhances accessibility for single-cell analysis.
**Instruct Version**: Focused solely on generating concise answers without extra text.
We provide a simple example for quick reference. This demonstrates a basic **cell type annotation** workflow.
Make sure to specify the paths for `H5AD_PATH` and `GENE_VOCAB_PATH` appropriately:
- `H5AD_PATH`: Path to your `.h5ad` single-cell data file (e.g., `H5AD_PATH = "path/to/your/data.h5ad"`).
- `GENE_VOCAB_PATH`: Path to your gene vocabulary file (e.g., `GENE_VOCAB_PATH = "path/to/your/gene_vocab.npy"`).
```pytho…
