LIORAEN-Omega / research /src /make_data.py
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LIORAEN-Omega research release 1.0.0; HF packaging 1.0.0-hf.1
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"""Regenerate synthetic data and publication figures; no experimental records."""
from __future__ import annotations
import csv, json, pathlib, sys
import numpy as np
import matplotlib
matplotlib.use('Agg')
import matplotlib.pyplot as plt
from scipy.constants import h, k as k_B
from lioraen_omega import (phase_model, reflection, sigma, pick_matrices,
spectral_mass_bound, recover, full_response, quadratic_value, controls)
ROOT=pathlib.Path(__file__).resolve().parents[1]
SEED=16102027
def write_csv(path, header, rows):
with path.open('w',newline='',encoding='utf-8') as f:
writer=csv.writer(f);writer.writerow(header);writer.writerows(rows)
def save_fig(name):
plt.tight_layout()
plt.savefig(ROOT/'manuscript'/'figures'/f'{name}.pdf',bbox_inches='tight')
plt.savefig(ROOT/'manuscript'/'figures'/f'{name}.png',dpi=160,bbox_inches='tight')
plt.close()
def main():
rng=np.random.default_rng(SEED)
for directory in ['physics','data','results','manuscript/figures']:
(ROOT/directory).mkdir(parents=True,exist_ok=True)
eta=.05;kext=.05;tau=.2;phis=[np.pi/2,-np.pi/2]
models=[phase_model(p) for p in phis]
omegas=np.linspace(-1.2,1.2,801)
values=np.array([[reflection(*model,float(w),1j*tau,eta,kext)
for w in omegas] for model in models])
contrast=np.abs(values[0]-values[1]);index=int(np.argmax(contrast));w0=float(omegas[index])
std_single=.001; repeats=25;std_mean=std_single/np.sqrt(repeats)
noisy=values+std_mean/np.sqrt(2)*(rng.normal(size=values.shape)+1j*rng.normal(size=values.shape))
rows=[]
for j,w in enumerate(omegas):
rows.append([w,values[0,j].real,values[0,j].imag,values[1,j].real,
values[1,j].imag,contrast[j],noisy[0,j].real,noisy[0,j].imag,
noisy[1,j].real,noisy[1,j].imag])
write_csv(ROOT/'physics'/'phase_scan.csv',
['omega_over_Omega0','S_plus_real','S_plus_imag','S_minus_real','S_minus_imag',
'absolute_contrast','noisy_plus_real','noisy_plus_imag',
'noisy_minus_real','noisy_minus_imag'],rows)
plt.figure(figsize=(7.0,4.2))
plt.plot(omegas,np.abs(values[0]),label=r'$\phi=+\pi/2$')
plt.plot(omegas,np.abs(values[1]),label=r'$\phi=-\pi/2$')
plt.xlabel(r'Drive detuning $\omega/\Omega_0$');plt.ylabel('Reflection amplitude magnitude')
plt.title('Synthetic phase-controlled one-port response');plt.legend()
save_fig('reflection_phase')
plt.figure(figsize=(7.0,4.2))
plt.plot(omegas,contrast)
plt.xlabel(r'Drive detuning $\omega/\Omega_0$');plt.ylabel(r'$|S_{+}-S_{-}|$')
plt.title('Synthetic complex-reflection contrast')
save_fig('phase_contrast')
# Raw four-setting reconstruction and withheld checks use full resolvents.
ts=[tau*t for t in controls(1)];H,L,C=models[0];z=w0+1j*eta
fs=[full_response(H,L,C,z,t) for t in ts]
cal_records=[];fmeas=[]
for j,(t,f) in enumerate(zip(ts,fs)):
sexact=1-1j*kext/f
sm=sexact+std_mean/np.sqrt(2)*(rng.normal()+1j*rng.normal())
gm=(1-sm)/(1j*kext);fm=1/gm;fmeas.append(fm)
cal_records.append([j,t[0].real,t[0].imag,sexact.real,sexact.imag,
sm.real,sm.imag,f.real,f.imag,fm.real,fm.imag])
write_csv(ROOT/'physics'/'raw_control_records.csv',
['setting','t_real','t_imag','S_exact_real','S_exact_imag','S_measured_real',
'S_measured_imag','F_exact_real','F_exact_imag','F_measured_real',
'F_measured_imag'],cal_records)
rec=recover(ts,fs);recnoise=recover(ts,fmeas)
withheld=[]
for j in range(20):
t=tau*(rng.normal(size=1)+1j*rng.normal(size=1))
truth=full_response(H,L,C,z,t);pred=quadratic_value(rec,t)
noisy_pred=quadratic_value(recnoise,t)
# An intentional hidden-mode shift only at validation invalidates the model.
Ldrift=L.copy();Ldrift[0,0]+=.025
drift=full_response(H,Ldrift,C,z,t)
withheld.append([j,t[0].real,t[0].imag,truth.real,truth.imag,
abs(pred-truth),abs(noisy_pred-truth),abs(pred-drift)])
write_csv(ROOT/'physics'/'withheld_controls.csv',
['index','t_real','t_imag','F_true_real','F_true_imag','exact_prediction_error',
'noisy_prediction_error','deliberate_drift_error'],withheld)
# Return-memory cross-pole invariant.
times=np.linspace(0,10,501)
mem=np.array([abs(np.exp(.6j*times)+np.exp(1j*p)*np.exp(-.6j*times))**2 for p in phis])
write_csv(ROOT/'data'/'memory_phase.csv',['time_times_Omega0','plus','minus'],
zip(times,mem[0],mem[1]))
plt.figure(figsize=(7,4.2))
for p,m in zip(phis,mem):
plt.plot(times,m,label=r'$\phi=+\pi/2$' if p>0 else r'$\phi=-\pi/2$')
plt.xlabel(r'Dimensionless time $t\Omega_0$');plt.ylabel(r'$|\mathcal{M}_{12}(t)|^2/g^4$')
plt.legend();plt.title('A phase relation across two spectral poles')
save_fig('memory_phase')
ns=np.arange(1,9);profile=np.minimum(ns,3)+2*np.minimum(ns,2)
write_csv(ROOT/'data'/'rank_profiles.csv',['nodes','seven_state_Hermitian','one_damped_state'],zip(ns,profile,ns))
plt.figure(figsize=(7,4.2))
plt.plot(ns,profile,'o-',label='Seven-state Hermitian model (q=3)')
plt.plot(ns,ns,'s--',label='One damped state, unshifted kernel (q=1)')
plt.xlabel('Number of distinct sample frequencies');plt.ylabel('Exact kernel rank')
plt.xticks(ns);plt.legend();plt.title('Completion versus persistent rank growth')
save_fig('rank_profiles')
zs=np.linspace(-2,2,8)+.7j;gamma=.4
vals=[np.array([[1/(z+1j*gamma)]]) for z in zs]
K,_,_=pick_matrices(zs,vals);Kcorrect,_,_=pick_matrices(zs+1j*gamma,vals)
eig=np.linalg.eigvalsh(K)[::-1];correct=np.linalg.eigvalsh(Kcorrect)[::-1]
write_csv(ROOT/'data'/'damping_kernel_spectrum.csv',
['index','uncorrected_eigenvalue','known_shift_eigenvalue'],zip(range(1,9),eig,correct))
plt.figure(figsize=(7,4.2))
plt.semilogy(range(1,9),np.maximum(abs(eig),1e-18),'o-',label='Unshifted Pick kernel')
plt.semilogy(range(1,9),np.maximum(abs(correct),1e-18),'s--',label='Known common linewidth shift')
plt.xlabel('Eigenvalue index');plt.ylabel('Absolute numerical eigenvalue')
plt.legend();plt.title('One damped mode: two different dimension questions')
save_fig('damping_spectrum')
# A nonvacuous but deliberately conservative support witness.
wz=np.array([-.7+.5j,0+.5j,.7+.5j]);roots=np.array([-.5,.5])
masses=np.array([1.,1.,1e-6]);poles=np.array([-.5,.5,.9])
vals=[np.array([[sum(masses/(z-poles))]]) for z in wz]
Kw,_,_=pick_matrices(wz,vals)
result=spectral_mass_bound(wz,roots,Kw,1,1.,.2,sample_error=1e-10)
result['weights']=[[float(a.real),float(a.imag)] for a in result['weights']]
result.update(actual_outside_mass=1e-6,total_mass=float(sum(masses)),
support_radius=1.,band_radius=.2,assumed_sample_error=1e-10)
assert result['bound']>=result['actual_outside_mass']
(ROOT/'results'/'spectral_witness.json').write_text(json.dumps(result,indent=2)+'\n')
occupation=float(1/np.expm1(h*10e6/(k_B*.01)))
real_null=max(abs(full_response(*models[0],z,[x])-full_response(*models[1],z,[x]))
for x in np.linspace(-.5,.5,31))
report=dict(status='entirely synthetic; no physical experiment',seed=SEED,
angular_frequency_unit_rad_per_s=float(2*np.pi*1e6),
parameter_units='Hamiltonian, linewidth, and drive detuning divided by Omega0',
eta=.05,kappa_external=.05,g=.3,tau=.2,
visible_detunings=[-.1,.15],hidden_detunings=[-.6,.6],
maximum_complex_reflection_contrast=float(contrast[index]),
omega_at_maximum=w0,frequency_grid_points=len(omegas),
maximum_absolute_reflection=float(abs(values).max()),
real_control_transpose_null_max=float(real_null),
assumed_single_record_complex_rms=std_single,repeats=repeats,
assumed_averaged_complex_rms=std_mean,assumed_systematic_target=.005,
thermal_example=dict(frequency_Hz=10e6,temperature_K=.01,occupation=occupation),
control_design_condition=rec['condition'],
maximum_exact_withheld_error=float(max(row[5] for row in withheld)),
maximum_noisy_withheld_error=float(max(row[6] for row in withheld)),
minimum_deliberate_drift_error=float(min(row[7] for row in withheld)),
maximum_deliberate_drift_error=float(max(row[7] for row in withheld)),
witness_bound=float(result['bound']))
assert report['maximum_absolute_reflection']<=1+1e-10
assert real_null<1e-10
assert report['maximum_exact_withheld_error']<1e-8
(ROOT/'physics'/'parameters_and_results.json').write_text(json.dumps(report,indent=2)+'\n')
tex=(r'\newcommand{\PeakContrast}{'+f"{report['maximum_complex_reflection_contrast']:.4f}"+'}\n'+
r'\newcommand{\PeakFrequency}{'+f'{w0:.3f}'+'}\n'+
r'\newcommand{\ThermalOccupation}{'+f'{occupation:.2f}'+'}\n'+
r'\newcommand{\WitnessBound}{'+f"{result['bound']:.6f}"+'}\n')
(ROOT/'manuscript'/'generated_numbers.tex').write_text(tex)
print(json.dumps(report,indent=2))
if __name__=='__main__':main()