| # Manually specify values used in the config | |
| main_task="preprocess" | |
| data_task_type="fimo" | |
| timestamp=$(date "+%Y-%m-%d_%H-%M-%S") | |
| run_dir="/vast/projects/pranam/lab/sophie/DPACMAN/logs/${main_task}/${data_task_type}/runs/${timestamp}" | |
| mkdir -p "$run_dir" | |
| nohup python -u -m scripts.preprocess \ | |
| hydra.run.dir="${run_dir}" \ | |
| data_task=${data_task_type}/post_fimo \ | |
| data_task.debug="false" \ | |
| data_task.keep_fimo_only="false" \ | |
| data_task.processed_output_csv="dpacman/data_files/processed/fimo/post_fimo/all_peaks/remap2022_crm_fimo_output_q_processed.csv" \ | |
| > "${run_dir}/run.log" 2>&1 & | |
| echo $! > "${run_dir}/pid.txt" |