One GIF per compound under md/animations/, 50 ns in chloroform, replica 1. Framing set from each molecule radius so nothing is cropped; depth shading off.
Add an animated render of the C1 chloroform trajectory
C1 (egfrvhl_dm2) over 50 ns in chloroform: extended at the start, collapsed by roughly 17 ns and folded thereafter. render_md_gif.py reproduces it from any finished replica.
The overview animation is shared by both releases, so it belongs beside the root card rather than inside the PDC folder. Copied server-side; the PDC card now renders without it.
Mirrors the CupOFMoCA-PDC layout: checkpoints/, configs/paper.json with the
reported sampling settings, docs/artifacts.json verified by
scripts/verify_release.py, and the generation outputs behind the reported
tables under results/.
DegradeMaster and EGFR-PROPK are published upstream without a license and are
not redistributed; scripts/fetch_third_party.py retrieves them at the pinned
commits. The unlicensed, unused ORCA C++ sources bundled with DeFoG are
excluded. DeFoG itself is MIT, with its license at src/defog/LICENSE.
Mirrors the CupOFMoCA-PDC layout: checkpoints/, configs/paper.json with the
reported sampling settings, docs/artifacts.json verified by
scripts/verify_release.py, and the generation outputs behind the reported
tables under results/.
DegradeMaster and EGFR-PROPK are published upstream without a license and are
not redistributed; scripts/fetch_third_party.py retrieves them at the pinned
commits. The unlicensed, unused ORCA C++ sources bundled with DeFoG are
excluded. DeFoG itself is MIT, with its license at src/defog/LICENSE.
Reorganise the repository into one folder per conjugate modality so the PROTAC release can sit beside the PDC one under the same citation URL.
Checkpoints are copied server-side rather than re-uploaded. .gitattributes stays at the root so its LFS rules apply to both trees.
